curl ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/edirect.zip -O (熟悉curl下载文件的方法,见http://www.cnblogs.com/duhuo/p/5695256.html)
echo 'export PATH=/home/lmt/desktop/edirect/:$PATH' >> ~/.zshrc (根据自己的配置文件选择,可能使~/.bashrc。查看shell ,echo $SHELL 就晓得啦)
>KP757892.1 Porcine deltacoronavirus isolate CHN-JS-2014, complete genome
ACATGGGGACTAAAGATAAAAATTATAGCATTAGTCTATAATTTTATCTCCCTAGCTTCGCTAGTTCTCT
ACCGACACCAATCCAGGTGCGTCTGCCACCAAGTTGGCTACCCTTTCTAGGGGCGCTTTCGCGCTTGCTC
ACCATTAGATTACCTGGAAACCAGCCATTCAGGTTGGAGTTTCCCCAGGCTCTTTTGTGTGGGCATTAGC
>lcl|KP757892.1_gene_3 [gene=E] [locus_tag=PDCoV-CHN-JS-2014_gp3] [location=22797..23048]
ATGGTAGTCGACGACTGGGCCGTTACCATCCCTGGACAATATATTATTGCTATACTAGTTGTCATCTGCA
TTGGTGTGGCACTACTTTTTATTAACACTTGCTTAGCTTGTGTTAAATTATTTTACAAGTGCTACCTAGG
GGCAGCATACCTTGTTAGGCCTATTATAGTGTACTACTCCAAGCCGAACCCCGTACCTGAGGATGAGTTT
GTAAAAGTACACCAATTTCCTAGAAACACTCACTATGTCTGA
>lcl|KP757892.1_gene_4 [gene=M] [locus_tag=PDCoV-CHN-JS-2014_gp4] [location=23041..23694]
ATGTCTGACGCAGAAGAGTGGCAAATTATTGTTTTCATTGCGATCATATGGGCGCTTGGCGTCATCCTCC
AAGGAGGCTATGCCACGCGTAATCGTGTGATCTATGTTATTAAACTTATTCTGCTTTGGCTGCTCCAACC
CTTCACCCTAGTGGTGACCATTTGGACCGCAGTTGACAGATCATCTAAGAAGGACGCAGTTTTCATTGTG
TCCATAATTTTTGCCGTACTGACCTTCATATCCTGGGCCAAGTACTGGTATGACTCAATTCGCTTATTAA
TGAAAACCAGATCTGCATGGGCACTCTCACCTGAGAGTAGACTCCTTGCAGGGATTATGGATCCAATGGG
TACATGGAGGTGCATTCCCATCGACCACATGGCTCCAATTCTCACACCAGTCGTTAAGCATGGCAAGCTC
>lcl|KP757892.1_prot_AKC54443.1_3 [gene=E] [locus_tag=PDCoV-CHN-JS-2014_gp3] [protein=envelope protein] [protein_id=AKC54443.1] [location=22797..23048] [gbkey=CDS]
MVVDDWAVTIPGQYIIAILVVICIGVALLFINTCLACVKLFYKCYLGAAYLVRPIIVYYSKPNPVPEDEF
VKVHQFPRNTHYV
>lcl|KP757892.1_prot_AKC54444.1_4 [gene=M] [locus_tag=PDCoV-CHN-JS-2014_gp4] [protein=membrane protein] [protein_id=AKC54444.1] [location=23041..23694] [gbkey=CDS]
MSDAEEWQIIVFIAIIWALGVILQGGYATRNRVIYVIKLILLWLLQPFTLVVTIWTAVDRSSKKDAVFIV
SIIFAVLTFISWAKYWYDSIRLLMKTRSAWALSPESRLLAGIMDPMGTWRCIPIDHMAPILTPVVKHGKL
KLHGQELANGISVRNPPQDMVIVSPSDTFHYTFKKPVESNNDPEFAVLIYQGDRASNAGLHTITTSKAGD
ARLYKYM
>lcl|KP757892.1_cds_AKC54443.1_3 [gene=E] [locus_tag=PDCoV-CHN-JS-2014_gp3] [protein=envelope protein] [protein_id=AKC54443.1] [location=22797..23048] [gbkey=CDS]
ATGGTAGTCGACGACTGGGCCGTTACCATCCCTGGACAATATATTATTGCTATACTAGTTGTCATCTGCA
TTGGTGTGGCACTACTTTTTATTAACACTTGCTTAGCTTGTGTTAAATTATTTTACAAGTGCTACCTAGG
GGCAGCATACCTTGTTAGGCCTATTATAGTGTACTACTCCAAGCCGAACCCCGTACCTGAGGATGAGTTT
GTAAAAGTACACCAATTTCCTAGAAACACTCACTATGTCTGA
>lcl|KP757892.1_cds_AKC54444.1_4 [gene=M] [locus_tag=PDCoV-CHN-JS-2014_gp4] [protein=membrane protein] [protein_id=AKC54444.1] [location=23041..23694] [gbkey=CDS]
ATGTCTGACGCAGAAGAGTGGCAAATTATTGTTTTCATTGCGATCATATGGGCGCTTGGCGTCATCCTCC
AAGGAGGCTATGCCACGCGTAATCGTGTGATCTATGTTATTAAACTTATTCTGCTTTGGCTGCTCCAACC
CTTCACCCTAGTGGTGACCATTTGGACCGCAGTTGACAGATCATCTAAGAAGGACGCAGTTTTCATTGTG
TCCATAATTTTTGCCGTACTGACCTTCATATCCTGGGCCAAGTACTGGTATGACTCAATTCGCTTATTAA
TGAAAACCAGATCTGCATGGGCACTCTCACCTGAGAGTAGACTCCTTGCAGGGATTATGGATCCAATGGG
TACATGGAGGTGCATTCCCATCGACCACATGGCTCCAATTCTCACACCAGTCGTTAAGCATGGCAAGCTC
LOCUS KP757892 25420 bp ss-RNA linear VRL 17-DEC-2015
DEFINITION Porcine deltacoronavirus isolate CHN-JS-2014, complete genome.
ACCESSION KP757892
VERSION KP757892.1
KEYWORDS .
SOURCE Porcine deltacoronavirus
ORGANISM Porcine deltacoronavirus
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
stage; Nidovirales; Coronaviridae; Coronavirinae.
REFERENCE 1 (bases 1 to 25420)
AUTHORS Dong,N., Fang,L., Zeng,S., Sun,Q., Chen,H. and Xiao,S.
TITLE Porcine Deltacoronavirus in Mainland China
JOURNAL Emerging Infect. Dis. 21 (12), 2254-2255 (2015)
PUBMED 26584185
REFERENCE 2 (bases 1 to 25420)
AUTHORS Dong,N., Fang,L., Zeng,S., Sun,Q. and Xiao,S.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2015) State Key Laboratory of Agricultural
Microbiology, Huazhong Agricultural University, 1 Shizishan Street,
Wuhan, Hubei 430070, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
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gene 22797..23048
/gene="E"
/locus_tag="PDCoV-CHN-JS-2014_gp3"
CDS 22797..23048
/gene="E"
/locus_tag="PDCoV-CHN-JS-2014_gp3"
/codon_start=1
/product="envelope protein"
/protein_id="AKC54443.1"
/translation="MVVDDWAVTIPGQYIIAILVVICIGVALLFINTCLACVKLFYKC
YLGAAYLVRPIIVYYSKPNPVPEDEFVKVHQFPRNTHYV"
gene 23041..23694
/gene="M"
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Run,ReleaseDate,LoadDate,spots,bases,spots_with_mates,avgLength,size_MB,AssemblyName,download_path,Experiment,LibraryName,LibraryStrategy,LibrarySelection,LibrarySource,LibraryLayout,InsertSize,InsertDev,Platform,Model,SRAStudy,BioProject,Study_Pubmed_id,ProjectID,Sample,BioSample,SampleType,TaxID,ScientificName,SampleName,g1k_pop_code,source,g1k_analysis_group,Subject_ID,Sex,Disease,Tumor,Affection_Status,Analyte_Type,Histological_Type,Body_Site,CenterName,Submission,dbgap_study_accession,Consent,RunHash,ReadHash
SRR3589948,2016-09-09 16:27:05,2016-05-26 07:22:58,40008592,4080876384,40008592,102,1812,,https://sra-download.ncbi.nlm.nih.gov/traces/sra40/SRR/003505/SRR3589948,SRX1801292,,RIP-Seq,other,TRANSCRIPTOMIC,PAIRED,0,0,ILLUMINA,Illumina HiSeq 2500,SRP075747,PRJNA323422,2,323422,SRS1468122,SAMN05178619,simple,9606,Homo sapiens,GSM2177715,,,,,,,no,,,,,GEO,SRA429358,,public,D9CB6278FA440C16D04832F947BF338F,165928A89FAE018C75463F7074DADEA8
SRR3589949,2016-09-09 16:27:05,2016-05-26 07:23:43,37825589,3858210078,37825589,102,1664,,https://sra-download.ncbi.nlm.nih.gov/traces/sra40/SRR/003505/SRR3589949,SRX1801293,,RIP-Seq,other,TRANSCRIPTOMIC,PAIRED,0,0,ILLUMINA,Illumina HiSeq 2500,SRP075747,PRJNA323422,2,323422,SRS1468123,SAMN05178620,simple,9606,Homo sapiens,GSM2177716,,,,,,,no,,,,,GEO,SRA429358,,public,4C986EE070A46559AF6F8892378A6E7C,EC2FFDCD9C997BED576391FD3B19CF9E